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周围神经MicroCT图像中神经束区域的自动分离

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  • 1. 广东财经大学 信息学院, 广州 510300;
    2. 广东工业大学 自动化学院, 广州 510006;
    3. 中山大学附属第一医院 显微外科, 广州 510085;
    4. 深圳市第六人民医院 骨科, 深圳 518000
李芳,研究方向:机器学习、图像处理,E-mail:9696096@qq.com

收稿日期: 2018-03-07

  修回日期: 2018-07-22

  网络出版日期: 2019-05-31

基金资助

广东省自然科学基金(No.2018A0303130137);广东省高性能计算重点实验室开放课题项目基金(No.TH1528);广东省哲学社会科学"十三·五"规划项目基金(No.GD17XGL20)资助

Automatic Extraction of Regions of Peripheral Nerve Internal Fascicular Groups from MicroCT Images

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  • 1. School of Information, Guangdong University of Finance & Economy, Guangzhou 510300, China;
    2. School of Automation, Guangdong University of Technology, Guangzhou 510006, China;
    3. Department of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou 510080, China;
    4. Department of Bone and Joint Surgery, Shenzhen Sixth People's Hospital, Shenzhen 518000, China

Received date: 2018-03-07

  Revised date: 2018-07-22

  Online published: 2019-05-31

摘要

针对经过饱和氯化钙染色的四肢周围神经MicroCT扫描图像,提出了一种自动分离神经束区域的方法.1)手工标注第1幅扫描图像中的神经束轮廓和非轮廓区域;2)采用稀疏自动编码机方法提取神经束轮廓和非轮廓的特征并训练神经网络,进而自动识别分离第2幅图像中神经束区域;3)将第2幅图像中的神经束轮廓作为标注样本去训练新的神经网络;4)不断循环该过程直至序列图像全部处理完成.实验结果表明,所提出的神经束轮廓自动分离方法可以达到手工分离精度的84.7%,处理完成522幅图像需要花费0.3~0.4 h.此外,该方法不仅能快速准确地分离出序列图像中的单根神经束,而且还能分离出分裂与合并阶段的神经束轮廓,具有比较强的适应性.

本文引用格式

李芳, 钟映春, 戚剑, 罗鹏 . 周围神经MicroCT图像中神经束区域的自动分离[J]. 应用科学学报, 2019 , 37(3) : 359 -368 . DOI: 10.3969/j.issn.0255-8297.2019.03.006

Abstract

A novel algorithm to extract the region of peripheral nerve internal fascicular groups automatically from MicroCT images is proposed. 1) the contour and non-contour of fascicular groups in the first MicroCT image were marked manually. 2) the sparse auto encoder (SAE) was employed to extract the features unsupervisedly and the corresponding neural network was trained in order to recognize the contour in the second image. 3) the contour and non-contour of fascicular groups in the second MicroCT image were used as the labeled samples to train a new neural network. 4) above process was repeated until all images were processed completely. The experimental results show that the accuracy of the algorithm in this paper reaches 84.7% of manual's and it can process 522 images only in 0.3~0.4 h. Additionally, not only the single groups but also the splitting and emerging groups can be extracted rapidly and accurately.

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